Posts tagged as:

catalysis

A Revolution
in de novo Protein Engineering Methodology

March 30, 2009

In a recent Nature article, researchers describe the design of a peptide foldamer device (a.k.a. “protein”) that binds and releases oxygen in a way that resembles the heme protein, neuroglobin — and they focus more on the design process than on the design product. They advocate an engineering approach that explicitly rejects aspects of the [...]

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Polyoxometalate Nanostructures

March 29, 2009

My technical talks often include a slide that shows several kinds of atomically precise components that may prove useful in composite nanosystems. One image is labeled “polyoxometalates”, a name that isn’t widely known. I think it should be.
Polyoxometalates (POMs) are molecular structures that are, in effect, atomically precise bits of metal oxide that contain [...]

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Effective Concentration in Self Assembly,
Catalysis, and Mechanosynthesis (2)

March 27, 2009

In my post on effective concentration, I noted that the concentration of water in water (about as high as a real concentration can be) is 55 M, while observed effective concentrations are often >55,000 M. This is puzzling until you realize that, for a molecular collision to result in a reaction, it must typically hit a target [...]

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Effective Concentration in Self Assembly,
Catalysis, and Mechanosynthesis (1)

March 22, 2009

I find that the concept of “effective concentration” helps to clarify my thinking about molecular processes that include catalysis, self assembly, and mechanosynthesis. The concept applies most directly to reaction rates, and it uses ordinary, solution-phase processes as a reference point.
Reactant concentration and reaction rate
In a relevant and typical case, molecules of type A react [...]

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